PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g024720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 230aa    MW: 25778.3 Da    PI: 6.0549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g024720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-1274120554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +  rE+ RRd++N++f+eL ++l +    +++K++K+ iL  Av+ + +L
  Sopen02g024720.1  74 KAHREKMRRDKLNDRFQELSSILEPG---KQPKMDKSVILGDAVRMVVQL 120
                       678**********************9...9**************987766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.66569120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-873125No hitNo description
PfamPF000104.9E-1073120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-975126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1375133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1475144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1705.1E-4134169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAETEEDGSN WLIELGLMED LPSLEPNAQW PSNAFSLPNN LSSGLEDSYG NSDSLKECGS  60
KKRVRSGACA SDSKAHREKM RRDKLNDRFQ ELSSILEPGK QPKMDKSVIL GDAVRMVVQL  120
RDEAQKLKES NNNLQEKVIE LKAEKNELRD EKQKLKAEKD KLEQHLKAMN TQPGFLPHPP  180
AMPSPFSAPH QVFASKMMPY LGYPGIPMWQ FVPPAAVDTS EDHSLRPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1583070.0KC158307.1 Solanum lycopersicum AFLP fragment TGG1, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066100.11e-170PREDICTED: transcription factor ILR3-like
SwissprotQ9FH377e-83ILR3_ARATH; Transcription factor ILR3
TrEMBLK4B9L81e-169K4B9L8_SOLLC; Uncharacterized protein
TrEMBLM1BYR31e-169M1BYR3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000559071e-169(Solanum tuberosum)
STRINGSolyc02g079970.2.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-84bHLH family protein